Pongo_abelii.PPYG2.74.dna.chromosome.X.fa

AminoSee DNA Render Summary

Hilbert curvers of dimension 8 used, yielding images with ~11.8 codons per pixel including non-coding regions. Linear reference file shows exactly 6 codons per pixel



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by Tom Atkinson          aminosee.funk.nz
ah-mee no-see      "I see it now...  I AminoSee it!"

Amino Acid	Hue°	RGB	Count	Description
0. Reference	0°	255,128,128	49,371,693	Composite of all amino acids
1. Ochre	0°	255,128,128	1,064,032	STOP Codon
2. Glutamic acid	16°	255,162,128	1,776,839	Group III: Acidic amino acids
3. Aspartic acid	31°	255,193,128	1,136,633	Group III: Acidic amino acids
4. Amber	47°	255,227,128	671,944	STOP Codon
5. Cysteine	63°	249,255,128	1,715,365	Group II: Polar, uncharged amino acids
6. Glycine	78°	217,255,128	2,370,246	Group I: Nonpolar amino acids
7. Alanine	94°	183,255,128	1,917,658	Group I: Nonpolar amino acids
8. Methionine	110°	149,255,128	951,251	START Codon
9. Valine	125°	128,255,138	2,498,853	Group I: Nonpolar amino acids
10. Leucine	141°	128,255,172	5,431,103	Group I: Nonpolar amino acids
11. Isoleucine	157°	128,255,206	3,116,970	Group I: Nonpolar amino acids
12. Phenylalanine	172°	128,255,238	3,010,754	Group I: Nonpolar amino acids
13. Tryptophan	188°	128,238,255	878,188	Group I: Nonpolar amino acids
14. Serine	203°	128,206,255	4,360,106	Group II: Polar, uncharged amino acids
15. Threonine	219°	128,172,255	2,491,906	Group II: Polar, uncharged amino acids
16. Opal	240°	128,128,255	983,325	STOP Codon
17. Glutamine	250°	149,128,255	1,912,899	Group II: Polar, uncharged amino acids
18. Asparagine	266°	183,128,255	2,056,928	Group II: Polar, uncharged amino acids
19. Tyrosine	282°	217,128,255	1,713,739	Group II: Polar, uncharged amino acids
20. Arginine	297°	249,128,255	2,311,170	Group IV: Basic amino acids
21. Lysine	313°	255,128,227	2,986,005	Group IV: Basic amino acids
22. Histidine	329°	255,128,193	1,652,649	Group IV: Basic amino acids
23. Proline	344°	255,128,162	2,363,130	Group I: Nonpolar amino acids
19 Amino Acids, 4 Start/Stop codes, 1 NNN	.	.	.	.

Render Summary

                [object Object]

AminoSeeNoEvil

DNA/RNA Chromosome Viewer

A new way to view DNA that attributes a colour hue to each Amino acid codon

Hilbert Projection

This is a curve that touches each pixel exactly once, without crossing over or breaking.

Linear Projection

The following image is in raster order, top left to bottom right:

About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.